Publications
Jafari G., Burghoorn J., Kawano T., Mathew M., Mörck C, Axäng C., Ailion M., Thomas J.H., Culotti J.G., Swoboda P., and Pilon M. (2010). Genetics of extracellular matrix remodeling during organ growth using the Caenorhabditis elegans pharynx model. Genetics 186: 969-982.
Piasecki B.P., Burghoorn J., and Swoboda P. (2010). Regulatory Factor X (RFX)-mediated transcriptional rewiring of ciliary genes in animals. Proceedings of the National Academy of Sciences USA 107: 12969-12974.
Burghoorn J., Dekkers M.P.J., Rademakers S., Jong T. d., Willemsen R., Swoboda P., and Jansen G. (2010). Dauer pheromone and G-protein signaling modulate the coordination of intraflagellar transport kinesin motor proteins in C. elegans. Journal of Cell Science 123: 2077-2084.
Senti G., Ezcurra M., Löbner J, Schafer WR, and Swoboda P. (2009). Worms with a single functional sensory cilium generate proper neuron-specific behavioral output. Genetics 183: 595-605.
Senti G. and Swoboda P. (2008). Distinct isoforms of the RFX transcription factor DAF-19 regulate ciliogenesis and maintenance of synaptic activity. Molecular Biology of the Cell 12: 5517-5528.
Ceron J. and Swoboda P. (2008). Caenorhabditis elegans comes of age. Genome Biology 9: 312 doi:10.1186/gb-2008-9-6-312.
Li C., Inglis P.N., Leitch C.C., Efimenko E., Zaghloul N.A., Mok C.A., Davis E.E., Bialas N.J., Healey M.P., Héon E., Zhen M. Swoboda P., Katsanis N., and Leroux M.R. (2008). An essential role for DYF-11/MIP-T3 in assembling functional intraflagellar transport complexes. PLoS Genetics 4(3): e1000044. doi:10.137/journal.pgen.1000044.
Laurencon
A., Dubruille R., Efimenko E., Grenier G., Bissett R., Cortier
E., Rolland V., Swoboda P. and Durand B. (2007). Identification
of novel Regulatory Factor X (RFX) target genes by comparative
genomics in Drosophila species. Genome
Biology 8, R195.
Chen
N., Mah A, Blacque O. E., Chu J., Phgora K., Bakhoum M. W., Hunt Newbury
C. R., Khattra J., Chan S., Go A., Efimenko E., Johnsen R., Phirke
P., Swoboda P., Marra M., Moerman D. G., Leroux M. R., Baillie
D. L. and Stein L. D. (2006).
Identification of ciliary and ciliopathy genes in Caenorhabditis
elegans through comparative genomics.
Genome Biology 7, R126.
Efimenko E., Blacque O. E., Ou G., Haycraft C. J.,
Yoder B. K., Scholey J. M., Leroux M. R. and Swoboda P. (2006).
Caenorhabditis elegans DYF-2, an ortholog of human WDR19,
is a component of the IFT machinery in sensory cilia. Molecular
Biology of the Cell 17, 4801-4811.
Miranda-Vizuete
A., Fierro González J. C., Gahmon G., Burghoorn J., Navas
P. and Swoboda P. (2006).
Lifespan decrease in a Caenorhabditis
elegans mutant lacking TRX-1, a thioredoxin expressed in
ASJ sensory neurons. FEBS Letters 580,
484-490.
Winkelbauer
M. E., Schafer J. C., Haycraft C. J., Swoboda
P. and Yoder B. K. (2005). The
C. elegans homologs of nephrocystin-1 and nephrocystin-4
are cilia transition zone proteins involved in chemosensory perception.
Journal of Cell Science 118, 5575-5587.
Blacque O. E., Perens E. A., Boroevich K. A., Inglis P. N., Li C., Warner A., Khattra J., Holt R. A., Ou G., Mah A. K., McKay S. J., Huang P., Swoboda P., Jones S. J. M., Marra M. A., Baillie D. L., Moerman D. G., Shaham S. and Leroux M. R. (2005). "Functional Genomics of the Cilium, a Sensory
Organelle." Current Biology 15, 935-941.
Efimenko
E., Bubb K., Mak H. Y., Holzman T., Leroux M. R., Ruvkun G., Thomas
J. H. and
Swoboda
P. (2005). "Analysis of xbx genes in C.
elegans." Development 132, 1923-1934.
Schafer
J. C., Haycraft C. J., Thomas J. H., Yoder B. K. and Swoboda P. (2003). "XBX-1
encodes a dynein light intermediate chain (DLIC) required for retrograde intraflagellar
transport and cilia assembly in C. elegans." Molecular Biology
of the Cell 14, 2057-2070.
Dubruille
R., Laurencon A., Vandaele C., Shishido E., Coulon-Bublex M., Swoboda
P., Couble
P., Kernan M. and Durand B. (2002). "Drosophila
Regulatory factor X is necessary for ciliated sensory neuron differentiation." Development 129,
5487-5498.
Haycraft
C.J., Swoboda P., Taulman P. D., Thomas J. H. and Yoder B. K. (2001). "The C.
elegans homolog of the murine cystic kidney disease
gene Tg737 functions in a ciliogenic pathway and is disrupted
in osm-5 mutant worms." Development 128,
1493-1505.
Swoboda
P., Adler H. T. and Thomas J. H. (2000). "The RFX-type
transcription factor DAF-19 regulates sensory neuron cilium formation
in C. elegans." Molecular
Cell 5, 411-421.