For ease of use the complete publication list of Lennart Nilsson and Alessandra Villa are made available via www.researcherid.com
Publications of Andrey Karshikoff
1. Karshikoff,
A., Reinemer, P., Huber, R., and Ladenstein, R. (1993) ELECTROSTATIC EVIDENCE
FOR THE ACTIVATION OF THE GLUTATHIONE THIOL BY TYR7 IN PI-CLASS GLUTATHIONE
TRANSFERASES, European Journal of Biochemistry 215, 663-670.
2. Karshikoff,
A., Spassov, V., Cowan, S. W., Ladenstein, R., and Schirmer, T. (1994)
ELECTROSTATIC PROPERTIES OF 2 PORIN CHANNELS FROM ESCHERICHIA-COLI, Journal
of Molecular Biology 240, 372-384.
3. Baumann,
H., Knapp, S., Karshikoff, A., Ladenstein, R., and Hard, T. (1995) DNA-BINDING
SURFACE OF THE SSO7D PROTEIN FROM SULFOLOBUS-SOLFATARICUS, Journal of
Molecular Biology 247, 840-846.
4. Karshikoff,
A. (1995) A SIMPLE ALGORITHM FOR THE CALCULATION OF MULTIPLE-SITE TITRATION
CURVES, Protein Engineering 8, 243-248.
5. Knapp,
S., Karshikoff, A., Waldkoter, K., Rudiger, A., Antranikian, G., and
Ladenstein, R. (1995) PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF AN EXTREMELY
THERMOSTABLE GLUTAMATE-DEHYDROGENASE FROM THE ARCHAEON PYROCOCCUS-WOESEI, Acta
Crystallographica Section D-Biological Crystallography 51, 395-398.
6. Ladenstein,
R., Tibbelin, G., Karshikoff, A., Atrian, S., and Gonzalezduarte, R. (1995)
WELL-ORDERED CRYSTALS OF A SHORT-CHAIN ALCOHOL-DEHYDROGENASE FROM
DROSOPHILA-LEBANONENSIS - RE-EVALAUTION OF THE CRYSTALLOGRAPHIC DATA AND
ROTATION FUNCTION-ANALYSIS, Acta Crystallographica Section D-Biological
Crystallography 51, 69-72.
7. Knapp,
S., Karshikoff, A., Berndt, K. D., Christova, P., Atanasov, B., and Ladenstein,
R. (1996) Thermal unfolding of the DNA-binding protein Sso7d from the
hyperthermophile Sulfolobus solfataricus, Journal of Molecular Biology 264,
1132-1144.
8. Karshikoff,
A., and Ladenstein, R. (1998) Proteins from thermophilic and mesophilic
organisms essentially do not differ in packing, Protein Engineering 11,
867-872.
9. Knapp,
S., Mattson, P. T., Christova, P., Berndt, K. D., Karshikoff, A., Vihinen, M.,
Smith, C. I. E., and Ladenstein, R. (1998) Thermal unfolding of small proteins
with SH3 domain folding pattern, Proteins-Structure Function and
Bioinformatics 31, 309-319.
10. Voges,
D., and Karshikoff, A. (1998) A model of a local dielectric constant in
proteins, Journal of Chemical Physics 108, 2219-2227.
11. Miteva,
M., Andersson, M., Karshikoff, A., and Otting, G. (1999) Molecular
electroporation: a unifying concept for the description of membrane pore
formation by antibacterial peptides, exemplified with NK-lysin, Febs Letters
462, 155-158.
12. Consalvi,
V., Chiaraluce, R., Giangiacomo, L., Scandurra, R., Christova, P., Karshikoff,
A., Knapp, S., and Ladenstein, R. (2000) Thermal unfolding and conformational
stability of the recombinant domain II of glutamate dehydrogenase from the
hyperthermophile Thermotoga maritima, Protein Engineering 13,
501-507.
13. Altobelli,
G., Nacheva, G., Todorova, K., Ivanov, I., and Karshikoff, A. (2001) Role of
the C-terminal chain in human interferon gamma stability: An electrostatic
study, Proteins-Structure Function and Genetics 43, 125-133.
14. Karshikoff,
A., and Ladenstein, R. (2001) Ion pairs and the thermotolerance of proteins
from hyperthermophiles: a 'traffic rule' for hot roads, Trends in
Biochemical Sciences 26, 550-556.
15. Koumanov,
A., Karshikoff, A., Friis, E. P., and Borchert, T. V. (2001) Conformational
averaging in pK calculations: Improvement and limitations in prediction of
ionization properties of proteins, Journal of Physical Chemistry B 105,
9339-9344.
16. Koumanov,
A., Spitzner, N., Ruterjans, H., and Karshikoff, A. (2001) Ionization
properties of titratable groups in ribonuclease T-1 II. Electrostatic analysis,
European Biophysics Journal with Biophysics Letters 30, 198-206.
17. Spitzner,
N., Lohr, F., Pfeiffer, S., Koumanov, A., Karshikoff, A., and Ruterjans, H.
(2001) Ionization properties of titratable groups in ribonuclease T-1 - I.
pK(a) values in the native state determined by two-dimensional heteronuclear
NMR spectroscopy, European Biophysics Journal with Biophysics Letters 30,
186-197.
18. Koumanov,
A., Ruterjans, H., and Karshikoff, A. (2002) Continuum electrostatic analysis
of irregular ionization and proton allocation in proteins, Proteins-Structure
Function and Genetics 46, 85-96.
19. Kundrotas,
P. J., and Karshikoff, A. (2002) Modeling of denatured state for calculation of
the electrostatic contribution to protein stability, Protein Science 11,
1681-1686.
20. Kundrotas,
P. J., and Karshikoff, A. (2002) Model for calculation of electrostatic
interactions in unfolded proteins, Physical Review E 65.
21. Zachariae,
U., Koumanov, A., Engelhardt, H., and Karshikoff, A. (2002) Electrostatic
properties of the anion selective porin Omp32 from Delftia acidovorans and of
the arginine cluster of bacterial porins, Protein Science 11,
1309-1319.
22. Christova,
P., Todorova, K., Timtcheva, I., Nacheva, G., Karshikoff, A., and Nikolov, P.
(2003) Fluorescence studies on denaturation and stability of recombinant human
interferon-gamma, Zeitschrift Fur Naturforschung C-a Journal of Biosciences
58, 288-294.
23. Koumanov,
A., Benach, J., Atrian, S., Gonzalez-Duarte, R., Karshikoff, A., and
Ladenstein, R. (2003) The catalytic mechanism of Drosophila alcohol
dehydrogenase: Evidence for a proton relay modulated by the coupled ionization
of the active site lysine/tyrosine pair and a NAD(+) ribose OH switch, Proteins-Structure
Function and Genetics 51, 289-298.
24. Koumanov,
A., Zachariae, U., Engelhardt, H., and Karshikoff, A. (2003) Improved 3D
continuum calculations of ion flux through membrane channels, European
Biophysics Journal with Biophysics Letters 32, 689-702.
25. Kundrotas,
P. J., and Karshikoff, A. (2003) Effects of charge-charge interactions on
dimensions of unfolded proteins: A Monte Carlo study, Journal of Chemical
Physics 119, 3574-3581.
26. Milev,
S., Gorfe, A. A., Karshikoff, A., Clubb, R. T., Bosshard, H. R., and Jelesarov,
I. (2003) Energetics of sequence-specific Protein-DNA association: Binding of
integrase Tn916 to its target DNA, Biochemistry 42, 3481-3491.
27. Milev,
S., Gorfe, A. A., Karshikoff, A., Clubb, R. T., Bosshard, H. R., and Jelesarov,
I. (2003) Energetics of sequence-specific protein-DNA association:
Conformational stability of the DNA binding domain of integrase Tn916 and its
cognate DNA duplex, Biochemistry 42, 3492-3502.
28. Nacheva,
G., Todorova, K., Boyanova, M., Berzal-Herranz, A., Karshikoff, A., and Ivanov,
I. (2003) Human interferon gamma: significance of the C-terminal flexible
domain for its biological activity, Archives of Biochemistry and Biophysics
413, 91-98.
29. Irimia,
A., Vellieux, F. M. D., Madern, D., Zaccai, G., Karshikoff, A., Tibbelin, G.,
Ladenstein, R., Lien, T., and Birkeland, N. K. (2004) The 2.9 angstrom
resolution crystal structure of malate dehydrogenase from Archaeoglobus
fulgidus: Mechanisms of oligomerisation and thermal stabilisation, Journal
of Molecular Biology 335, 343-356.
30. Kundrotas,
P. J., and Karshikoff, A. (2004) Charge sequence coding in statistical modeling
of unfolded proteins, Biochimica Et Biophysica Acta-Proteins and Proteomics
1702, 1-8.
31. Bjelic,
S., Karshikoff, A., and Jelesarov, I. (2006) Stability and folding/unfolding
kinetics of the homotrimeric coiled coil Lpp-56, Biochemistry 45,
8931-8939.
32. Petrov,
S., Nacheva, G., Boyanova, M., Berzal-Herranz, A., Karshikoff, A., and Ivanov,
I. (2006) Human interferon gamma: significance of lysine 88 for its biological
activity, Febs Journal 273, 92-93.
33. Bjelic,
S., Wieninger, S., Jelesarov, M., and Karshikoff, A. (2008) Electrostatic
contribution to the thermodynamic and kinetic stability of the homotrimeric
coiled coil Lpp-56: A computational study, Proteins-Structure Function and
Bioinformatics 70, 810-822.
34. Jelesarov,
I., and Karshikoff, A. (2008) Meet to fold: The peculiar folding of oligomeric
protens, Biotechnology & Biotechnological Equipment 22,
598-605.
35. Karshikoff,
A., and Jelesarov, I. (2008) Salt bridges and conformational flexibility:
Effect on protein stability, Biotechnology & Biotechnological Equipment
22, 606-611.
36. Petrov,
S., Boyanova, M., Berzal-Herranz, A., Karshikoff, A., Nacheva, G., and Ivanov,
I. (2009) SIGNIFICANCE OF THE PUTATIVE UPSTREAM POLYBASIC NUCLEAR LOCALISATION
SEQUENCE FOR THE BIOLOGICAL ACTIVITY OF HUMAN INTERFERON-GAMMA, Biotechnology
& Biotechnological Equipment 23, 1058-1062.
37. Moutsatsou,
P., Papoutsi, Z., Kassi, E., Heldring, N., Zhao, C. Y., Tsiapara, A., Melliou,
E., Chrousos, G. P., Chinou, I., Karshikoff, A., Nilsson, L., and
Dahlman-Wright, K. (2010) Fatty Acids Derived from Royal Jelly Are Modulators
of Estrogen Receptor Functions, Plos One 5.