Podbat Downloads
Podbat version 0.5.3 (2011-12-9)
-Improved plot capabilities
-'Save session' saves changes to the visualization
-Sorting of numbers now sorts numbers and not text
-columns can be removed or hidden, and filtered
-possilibity to draw moving averages, both of gene averages and probes
-improved memory usage
- Macintosh (OS X version 1.4 or higher)
- Windows
- Platform independent zipped Jar-folder (Java version 1.6)
- Annotations
(in package)
- S. pombe 2004 (for use with data with repeats)
- S.pombe 2011 (Ensembl 9_62_1a)
- S. pombe Transcription start and termination sites (TSS, TTS) (Lantermann et al, 2010)
(not in package)
- Gene Ontologies from Ensembl: schizosaccharomyces_pombeGO.txt
- Annotations
- H.sapiens Entrez 61_37f
- S.cerevisiae SGD February 2011
- Genome (8_61_1a_dna.txt)
- Example experimental data (additional downloads)
- H2A.Z binding (for Podbat version 0.5.3)
- H2A.Z binding (for Podbat version 0.5.4beta)
- Previous versions:
0.5.1 (2011-9-21)
-Many minor issues corrected, such as you now can:
-zoom in at small regions
-make more lists in list panel
-export graph as in the view
-control y-axis in dialog box
-change sample names
-move sample panels
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)0.5.1 (2011-9-21)
-Corrected issues with region finding
-Improved visualization
-Logs available
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)0.5.0 (2011-8-15)
- Fixed issue with remote access to the central database.
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)Dataset: H2A.Z binding
0.4.8 (2011-6-23)
- Image export in several formats (GIF, JPEG, PNG, EPS)
-Improved memory management
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)0.4.7 (2011-6-19)
- Modification of samples
Macintosh (OS X version 1.4 or higher, 1.6 recommended)0.4.2 (2011-5-9)
- Statistical analysis with gene alignment
- Plugin accessibility
-Improved error handling
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)0.4.1 (2011-4-14)
- Access to sequence data.
- possibility to upload data from other sources to match elements
- Several minor bug fixes.
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)0.3.8 (2011-3-11)
- Major update
- The non-bundled Java version should now be better functionning.
- Data for S.cerevisiae included.
- Several major and minor bug fixes.
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)0.3.2 (2010-12-30)
- minor bug fixes
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)
Datasets:
Nucleosome positions (Lantermann et al, 2010)
Topoisomerases and transcription (Durand-Dubief et al, 2010)
0.3.1 (2010-12-03)
New features include:
- implements Hidden Markov Models to determine regions
- enables enrichment analysis of Gene Ontologies
- minor bug fixes
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6) -
0.3.0 (2010-11-14)
New features include:
- improved visualization of genome averages
- manages list
- remembers settings from previous settings
- ships with three annotations for S.pombe
- connects to Ensembl to retrieve data
Macintosh (OS X version 1.4 or higher, 1.6 recommended)
Platform independent zipped Jar-folder (Java version 1.6)
Package (v 0.4) for evaluation,
including instructions and test data (2011-3-19).
Files can now be downloaded from Sourceforge.
You an also access the documentation in a PDF format.