http://www.bionut.ki.se/applic/web/users/pesv/podbat/index.html News, updates and bug-fixes to Podbat. Science & Medicine en Copyright 2010 puffpe7e@gmail.com (Podbat Development Team ) puffpe7e@gmail.com http://www.bionut.ki.se/applic/web/users/pesv/podbat/images/icon1.pnghttp://www.bionut.ki.se/applic/web/users/pesv/podbat/index.html Sat, 8 Oct 2011 12:03:02 GMT Sat, 8 Oct 2011 12:03:02 GMT RSS DreamFeeder v 2.2.0 A Windows specific executable (with 1GB memory allocation) is now available is addition to the Mac application and platform-independent Java folder. A Windows specific executable (with 1GB memory allocation) is now available is addition to the Mac application and platform-independent Java folder. Wed, 11 Jan 2012 15:37:13 GMT manual:20120111:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb04.rss Update to version 0.5.3. Several new features and some bug fixes. The plot functions and sorting functions have been improved and it is now possible to calculate a running average. Update to version 0.5.3. Several new features and some bug fixes. The plot functions and sorting functions have been improved and it is now possible to calculate a running average. Fri, 9 Dec 2011 17:28:43 GMT manual:20111209:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb04.rss Update to version 0.5.2. Several minor bug fixes and some added features, such that you can now rename and reorder samples. Update to version 0.5.2. Several minor bug fixes and some added features, such that you can now rename and reorder samples. Sat, 8 Oct 2011 12:03:02 GMT manual:20111008:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb04.rss Several bug fixes regarding the region determination. Improvements to the visualization and logs are created. Several bug fixes regarding the region determination. Improvements to the visualization and logs are created. Wed, 21 Sep 2011 18:14:12 GMT manual:20110921:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Podbat is featured at EpiGenie. Read the text at http://www.epigenie.com/Headlines/Podbat-Genomic-Tool-H2A-Z-Epigenetic-Meta-Analysis.html. Podbat is featured at EpiGenie. Read the text at http://www.epigenie.com/Headlines/Podbat-Genomic-Tool-H2A-Z-Epigenetic-Meta-Analysis.html. Wed, 14 Sep 2011 21:44:43 GMT manual:20110914:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss The Podbat Wiki is relocated to Sourceforge. The Podbat Wiki is relocated to Sourceforge Fri, 2 Sep 2011 13:53:12 GMT manual:20110902:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss The description of Podbat is now available at PLoS Computational Biology. The description of Podbat is now available at PLoS Computational Biology. Thu, 25 Aug 2011 21:53:12 GMT manual:20110825:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Update to version 0.5.0. The access to the central database is now going through SSH, which eliminates a previous firewall issue from some computers. Update to version 0.5.0. The access to the central database is now going through SSH, which eliminates a previous firewall issue from some computers. Thu, 15 Aug 2011 12:45:32 GMT manual:20110815:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss New update to version 0.4.8. Improved memory management, possibility to add average line in sample panel, options to export image in several formats (GIF, PNG, JPEG, EPS). New update to version 0.4.8. Improved memory management, possibility to add average line in sample panel, options to export image in several formats (GIF, PNG, JPEG, EPS). Thu, 23 June 2011 17:16:57 GMT manual:20110623:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss The manuscript by Sadeghi et al describing Podbat has been accepted for publication in PLoS Computational Biology. The manuscript by Sadeghi et al describing Podbat has been accepted for publication in PLoS Computational Biology. Thu, 26 May 2011 16:30:17 GMT manual:20110526:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Update to version 0.4.2. Statistical analysis of gene alignments now included. Also, minor bug fixes. Update to version 0.4.2. Statistical analysis of gene alignments now included. Also, minor bug fixes. Mon, 9 May 2011 16:33:57 GMT manual:20110509:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Documentation is now available via PodbatWiki. Feel free to improve on the manuals and other documentation. Also, Podbat is now deposited at Sourceforge, where it can be downloaded and bugs can be reported. Documentation is now available via PodbatWiki. Feel free to improve on the manuals and other documentation. Also, Podbat is now deposited at Sourceforge, where it can be downloaded and bugs can be reported. Wed, 20 Apr 2011 12:05:57 GMT manual:20110420:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Update to version 0.4.1. New features include access to sequence data and possibility to upload data from other sources to match elements. Update to version 0.4.1. New features include access to sequence data and possibility to upload data from other sources to match elements. Thu, 14 Apr 2011 12:05:57 GMT manual:20110414:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Major update to version 0.3.8. The non-bundled Java version should now be better functionning. Data for S.cerevisiae included. Several major and minor bug fixes. Major update to version 0.3.8. The non-bundled Java version should now be better functionning. Data for S.cerevisiae included. Several major and minor bug fixes. Thu, 11 Mar 2011 12:05:57 GMT manual:20110311:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss "Topoisomerases, chromatin and transcription termination" by M. Durand-Dubief using Podbat is now available. "Topoisomerases, chromatin and transcription termination" by M. Durand-Dubief using Podbat is now available. Thu, 15 Feb 2011 12:05:57 GMT manual:20110215:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss New update with minor bug fixes in Podbat 0.3.2. New update with minor bug fixes in Podbat 0.3.2. Thu, 30 Dec 2010 12:05:57 GMT manual:20101230:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Update to Podbat 0.3.1. New features include Hidden Markov Models to detect regions and Gene Ontology enrichment analysis. Update to Podbat 0.3.1. New features include Hidden Markov Models to detect regions and Gene Ontology enrichment analysis. Fri, 03 Dec 2010 09:41:57 GMT manual:1291369445639:7235250272298277:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss A new paper using Podbat, "Topoisomerases, chromatin and transcription termination" by M. Durand-Dubief et al has been accepted for publication in Transcription. A new paper using Podbat, "Topoisomerases, chromatin and transcription termination" by M. Durand-Dubief et al has been accepted for publication in Transcription. Wed, 01 Dec 2010 09:29:28 GMT manual:1291195961850:0:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss Podbat 0.3 is now available for download. NB: this is an early access version. Podbat 0.3 is now available for download. NB: this is an early access version. Sun, 14 Nov 2010 12:49:54 GMT manual:1289739101313:20066464140502284:http://www.bionut.ki.se/applic/web/users/pesv/podbat/rssPb03.rss